Great pictures & Info. So the primary issue is with the front mount. The rear rubber mount is pretty solid/reliable and longer lasting?
Well that depends, in my case it "appeared" that about 80% of the stretch occurred in the front mount. There is inevitably "some" stretch in the rear, however my rear mount did not appear to be deformed like the front.
When you look at the parts manual (see attached PDF) it "appears" that the OEM assembly would have the rear mounted first to the tranny and frame. Then as the engine is set in place the front mount is attached and the the torque would appear to pull it forward and downward (to me) leaving the rear "somewhat" out of the stretch factor. You can draw your own conclusions on that.
In any case both should be inspected if an issue is present. When I replaced my front mount, I did the shim at that time so as not to stretch the new mount. After installing the front mount with the shims I then pulled the floor jack out of the way and put the bike on the lift.
I then loosened the rear mount bolts and inspected the rear mount with a flash lite as best I could, but did not remove it. I then tightened the rear mount bolts but left them still a tad loose, I also re-loosened the front mount bolts, just enough to take the tension off, they were still securely attached.
Then while up on the lift in the vertical postion I did the vertical alignment (it's a lot easier to pull or push the the top of the engine with the mounts loose). The Vertical Alignment is a whole nuther story that has been covered elsewhere so I want go into that again here.
After I had Vertical Alignment done, while still on the lift with the mount bolts still loose, I fired the engine up and rev'd it a few times to let the engine "settle" in it's mounts. Then I torqued both mounts to specs. (it's easier to torque the rear mount bolts if you take the brake wire loose)
Keep in mind vibration can come from other sources besides a bad motor mount, or the preload stretch deformation. But the washer shim (and a new front mount) did help my bike.
I noticed when I put Tbars on my bike and installed the heavy duty riser bushings I now have more vibration in the bars. But I will have to live with that since I like the way the bars feel and handle otherwise. Before when I had to push the bike the bars felt flimsy.