At the end of the day, one has to choose an exhaust system based on the look, the sound or the performance. If one's choice is based on the first two, then the choice is easy. However, if performance is considered as well, one needs to spend some time looking at dyno charts. You will not find dyno charts on some of the systems suggested in previous posts as many are not considered suitable performance systems for Stage I or even Stage II configurations.
As an example, the RB Racing systems that hold all the salt flat records are high rpm, horsepower pipes. They look cool and sound awesome but have no place on a Stage I or II street motor; the OEM system will perform better. Do some homework, as you are doing, and stay mainstream with products that have proven they perform. No need to reinvent the wheel.
The TTS Mastertune is, IMHO, the current state of the art when it comes to flash tuners. It is the second iteration of the SERT with more features, vtuning capability and much more user friendly.