I agree with Frenchie that intake and exhaust should be upgraded before or at the same time as upgrading cams. Thats why intake and exhuast upgrades are Stage 1 and adding cams to the mix is Stage II. JMHO but an "auto tune" feature, even Fuel Moto, as competent as they are, cannot design a map that will perform on the same level as a dyno tune. If planning to rely on an auto tune, the Thundermax is probably the best system to go that route.
If I were Joel I would take a steo back, upgrade intake an exhaust to Stage 1 find a tuner that sells Power Vision licences (most due these days) get the Stage I set up dyno tuned; there will be a noticeable, butt dyno result from a Stage I uprade with a proper dynot tune. Then, when the new wears off, upgrade cams, lifters and inner cam bearings and return to the tuner for an upgraded cyno tune. At 22K miles, unless the lifters are making noise, replacing liftes and inner cam bearrings is not a pressing issue.
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JMHO but that's the right way to do it.