If the issue is intermittent, and fuel pressure tests seem OK, whenever performed, The issue could also be the fuel pressure regulator. Under certain conditions, particuarly if fuel has been allowed to varnish a bit (sitting for more than a couple months), the fuel pressure regulator can become sticky. The symptoms are identical to the holes in the lines, except that they can be intermittent, showing up when taking off after idle or increasing from a steady speed. Holes in the lines do not tend to be intermittent, except that the symptoms may vary from submerged to emerged holes. So, that can help in distinguishing cause.
The fuel pump is single speed, and runs all the time the engine is running. The regulator should keep fuel rail pressure stable at around 58psi (+/- a couple lbs), regardless of load and rpm. When pressure increases past that point, because of lower demand, a spring-loaded diaphram in the regulator proportionally pushes open, bypassing the excess fuel back into the tank. When idling, the demand is the lowest, so the bypass is the greatest. If pressure drops, due to increased load/demand, but the bypass sticks at the higher bypass position, the fuel rail pressure drops, resulting in stuttering,, misfiring, flat power, etc., as descibed in above posts. Early on, the sticking can be brief, as the spring load in the regulator, combined with vibration can cause the regulator diaphram to unstick more or less quickly, resulting in brief sputtering when starting off from a stop, or right at an increase in demand (load/rpm).
Sticky pressure regulators will not throw codes on open loop engines (no O2 sensors), and may cause confusing codes on closed loop ones. With no codes to guide you, and many possible causes for the same symptoms, isolation can be difficult. The indicative symptom, for a regulator just starting to become sticky, is the brief stutter when starting off from stop, or right when increasing speed from a steady one. As the stickiness worsens the stuttering can become prolonged, even continuing for the rest of a ride session, only to clear up before you start her up next time, coming back in a few miles, etc.
This problem can masquerade as a thermal one, because of the enrichment that occurs when you first start up. When enrichment tapers out, the subtle leaning out from lowered fuel rail pressure tapers in. Also, the stuck regulator can pop back in normal operation, if you shut down for a few minutes, only to restick after a bit of time on the road.
I hope this helps. It was hard learned, over around 18 months of trying to track down the culprit, in my case.:newsmile093: Dealers, indy's, nobody could make it go a away. Let's just say, there is nothing in fuel, air, or spark delivery that I am afraid to work on. I know every related wire, bolt, and connector on my scooter, personally.
Enjoy,
Rich P